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E-RESOURCE

Title The maize genome / Jeffrey Bennetzen, Sherry Flint-Garcia, Candice Hirsch, Roberto Tuberosa, editors.

Published Cham, Switzerland : Springer, [2018]

Copies

Location Call No. Status
 UniM INTERNET resource    AVAILABLE
Physical description 1 online resource (xiv, 388 pages) : illustrations.
Series Compendium of plant genomes
Compendium of plant genomes.
Springer Biomedical and Life Sciences eBooks 2018 English+International
Bibliography Includes bibliographical references.
Contents Intro; Preface to the Series; Preface to "The Maize Genome" Volume; Contents; Genome Sequencing and Genotyping; 1 Draft Assembly of the F2 European Maize Genome Sequence and Its Comparison to the B73 Genome Sequence: A Characterization of Genotype-Specific Regions; Abstract; 1.1 F2 Is Characteristic from a European Hybridization Event; 1.2 B73- and F2-Specific Genome Region Discovery and Combination into a Draft B73-F2 Pan-Genome Sequence; 1.3 F2 Non-B73 Genes Are Expressed in Other Maize Lines, but Are not Well Conserved Outside Maize
1.4 The Dispensable Genome: A Genomic Faction that Recombines Less Than the Rest of the Genome1.5 Analysis of PAV Alleles at the Population Level; 1.6 Tomorrow's Challenges in Maize Structural Variation; References; 2 The Maize Pan-Genome; Abstract; 2.1 Introduction; 2.2 Mechanisms that Generate Genome Content Variation; 2.2.1 Transposable Elements; 2.2.2 Unequal Recombination; 2.2.3 Non-allelic Homologues; 2.2.4 Horizontal Gene Transfer; 2.2.5 Genome Duplication and Fractionation; 2.3 Contemporary Tools to Measure Genome Content Variation; 2.3.1 Reference-Based Methods
2.3.2 Non-Reference-Based Methods2.3.3 Iterative Mapping and Assembly; 2.4 History of Maize Genome Content Variation Studies; 2.4.1 Molecular and Cytogenetic Era; 2.4.2 Sanger Sequencing Era; 2.4.3 Array-Based Comparative Genomic Hybridization Era; 2.4.4 Second- and Third-Generation Sequencing Era; 2.5 Functional Importance of Genome Content Variation; 2.5.1 Gene and Genome Evolution; 2.5.2 Phenotypic Association and Cloned Genes; 2.5.3 Heterosis; 2.5.4 Dosage Balance; 2.6 Future Bioinformatic Challenges in the Era of Multiple Genome Assemblies; Acknowledgements; References
3 Rapid, Affordable, and Scalable Genotyping for Germplasm Exploration in MaizeAbstract; 3.1 Introduction; 3.2 Array-Based Genotyping Platforms; 3.2.1 Illumina® GoldenGate™ Assay; 3.2.2 Illumina® MaizeSNP50 BeadChip; 3.2.3 600 K and 55 K Affymetrix® Axiom® Maize Genotyping Array; 3.3 Sequence-Based Genotyping Platforms; 3.3.1 Genotyping by Sequencing (GBS); 3.3.2 DArTseq; 3.3.3 rAmpSeq; 3.3.4 Transcriptome Sequencing; 3.4 Future Directions and Challenges: Cheap Sequencing and Data Sharing; Acknowledgements; References; Genome Structure and Phenomena; 4 Maize Transposable Element Dynamics
Abstract4.1 Introduction; 4.2 The Recent History of TE Activity in the Zea Lineage; 4.2.1 Panicoid Grass Genomes; 4.2.2 Three Diploid Zea Species; 4.2.3 Vertical Versus Horizontal TE Transmission; 4.3 The Transition Between Inactive and Active TE States; 4.3.1 Epigenetic and Genetic Regulation; 4.3.2 Mutational Control; 4.3.3 Stress-Induced Activation; 4.4 Selection for or Against General TE Activity; 4.5 Conclusions; Acknowledgements; References; 5 Genomics of Maize Centromeres; Abstract; 5.1 Introduction; 5.2 Genetic Composition of Maize Centromeres; 5.2.1 Centromere Repeats
Summary This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world's human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.
Other author Bennetzen, Jeffrey L. (Jeffrey Lynn), editor.
Flint-Garcia, Sherry, editor.
Hirsch, Candice, editor.
Tuberosa, R. (Roberto), editor.
SpringerLink issuing body.
Subject Corn -- Genetics.
Corn -- Genome mapping.
Genomes.
Electronic books.
ISBN 9783319974279 electronic book
3319974270 electronic book
9783319974262
3319974262
Standard Number 10.1007/978-3-319-97427-9